---

NETGE-PLUS 2.0 statistics

---

STRING statistics

NETGE-PLUS is based on the STRING v.10.5 resource.

The number of nodes and links are provided in the following table.

	H. sapiens	S. scrofa	S. cerevisiae	E. coli	A. thaliana
Nodes	18,838	18,863	6,204	4,136	24,174
Links	792,901	731,174	275,921	106,564	1,864,343

Sources of data for gene/protein annotation

Gene Ontology as retrieved from UniProt-GOA v.169

KEGG v.83.2

REACTOME v.61

Statistics for each organism are given as follows:

H. sapiens		GO:BP	GO:MF	GO:CC	KEGG	REACTOME
Standard	Terms	14,742	4,542	1,809	367	1,924
	Genes	15,699	13,975	12,043	6,949	10,248
	Associations	550,604	119,843	91,181	50,560	101,326
Network	Terms	147,42	4,542	1,809	367	1,924
	Genes	17,237	16,348	15,476	11,501	13,399
	Associations	1,997,417	399,321	362,838	118,085	187,373

S. scrofa		GO:BP	GO:MF	GO:CC	KEGG	REACTOME
Standard	Terms	12,064	3,598	1,497	365	1,498
	Genes	13,024	12,441	9,269	2,620	7,777
	Associations	314,294	85,765	51,820	22,092	78,555
Network	Terms	12,064	3,598	1,497	365	1,498
	Genes	15,571	15,102	13,456	6,727	11,430
	Associations	1,074,550	237,343	184,198	51,027	149,401

S. cerevisiae		GO:BP	GO:MF	GO:CC	KEGG	REACTOME
Standard	Terms	5,201	2,485	1,022	144	855
	Genes	5,143	4,409	5,529	2,005	1,500
	Associations	195,515	52,914	47,751	10,207	64,312
Network	Terms	5,201	2,485	1,022	144	855
	Genes	5,868	5,502	6,168	3,366	2,830
	Associations	496,492	127,343	116,273	18,058	22,764

E. coli		GO:BP	GO:MF	GO:CC	KEGG	REACTOME
Standard	Terms	3,008	2,394	253	145	NA
	Genes	3,348	3,139	2,914	1,528	NA
	Associations	91,350	39,989	16,302	8,753	NA
Network	Terms	3,008	2,394	253	145	NA
	Genes	3,981	3,898	3,905	2,758	NA
	Associations	258,396	114,407	46,152	17,779	NA

A. thaliana		GO:BP	GO:MF	GO:CC	KEGG	REACTOME
Standard	Terms	5,603	2,999	936	155	801
	Genes	15,518	14,577	9,200	4,715	3,765
	Associations	208,361	76,151	49,653	14,379	33,541
Network	Terms	5,603	2,999	936	155	801
	Genes	20,010	19,048	16,393	8,810	9,249
	Associations	770,703	227,298	189,321	30,015	62,144

Module size statistics

	Seed set						Network-based modules
Annotation database	Mean		σ	Median	Min	Max	Mean	σ	Median	Min	Max
H. sapiens
GO-BP	37		112	5	1	1297	135	501	8	1	6251
GO-CC	50		146	6	1	1296	201	695	8	1	6616
GO-MF	26		99	3	1	1271	88	413	4	1	6401
KEGG	138		229	76	1	2113	322	748	121	1	6242
KEGG-NET	76		62	63	1	405	126	122	84	1	673
Reactome	53		113	19	1	1332	97	330	21	1	5367
S. scrofa
GO-BP	26		84	4	1	994	89	343	7	1	4203
GO-CC	35		100	5	1	983	123	429	7	1	4647
GO-MF	24		84	3	1	955	66	286	4	1	4339
KEGG	61		118	29	1	1138	140	331	45	1	2637
KEGG-NET	29		25	22	1	209	50	49	34	1	257
Reactome	52		123	17	1	1854	100	354	20	1	5034
A. thaliana
GO-BP	37		100	6	1	982	138	491	8	1	6294
GO-CC	53		139	8	1	933	202	722	9	1	6342
GO-MF	25		83	3	1	949	76	335	4	1	4891
KEGG	93		126	46	1	726	194	380	54	1	2221
KEGG-NET	58		59	41	2	338	86	126	44	2	1093
Reactome	42		84	16	1	1034	78	309	18	1	4248
S. cerevisiae
GO-BP	38		144	5	1	2098	95	397	6	1	4776
GO-CC	47		185	6	1	2186	114	472	7	1	5137
GO-MF	21		101	2	1	1904	51	274	3	1	4193
KEGG	71		140	23	1	853	125	321	25	1	1992
KEGG-NET	34		44	20	1	297	43	66	22	1	508
Reactome	18		35	8	1	455	27	89	9	1	1267
E. coli
GO-BP	30		120	4	1	2072	86	344	4	1	3620
GO-CC	64		214	4	1	1456	182	624	4	1	3446
GO-MF	17		89	2	1	2018	48	258	2	1	3622
KEGG	60		130	22	1	968	123	314	26	1	2261
KEGG-NET	27		41	16.5	1	302	43	90	19	1	717

σ = standard deviation. Min = minimum size. Max = Maximum size